Welcome to PyIOmica's documentation!
====================================

.. image:: https://raw.githubusercontent.com/gmiaslab/pyiomica/master/pyiomica/data/PyIOmica.png
   :width: 400 px
   :alt: PyIOmica logo
   :align: center

This documentation describes PyIOmica, a Python package that provides
bioinformatics utilities for analyzing (dynamic) omics datasets.
PyIOmica extends MathIOmica usage to Python and implements new
visualizations and computational tools for graph analyses.

.. image:: https://img.shields.io/github/v/release/gmiaslab/pyiomica?logo=github
    :target: https://github.com/gmiaslab/pyiomica
.. image:: https://img.shields.io/pypi/v/pyiomica?logo=pypi
    :target: https://pypi.org/project/pyiomica
.. image:: https://readthedocs.org/projects/pyiomica/badge/?version=latest&style=flat
    :target: https://pyiomica.readthedocs.io
.. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.3342612.svg
    :target: https://doi.org/10.5281/zenodo.3342612
.. image:: https://img.shields.io/pypi/l/pyiomica
    :target: https://pypi.org/project/pyiomica

.. toctree::
   :numbered: 1
   :maxdepth: 4
   :caption: Contents:

   overview
   installationInstructions
   packageFunctionality
   dependencies
   pyiomica.data
   Examples


Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`