Welcome to PyIOmica’s documentation!¶
This documentation describes PyIOmica, a Python package that provides bioinformatics utilities for analyzing (dynamic) omics datasets. PyIOmica extends MathIOmica usage to Python and implements new visualizations and computational tools for graph analyses.
- 1. Overview
- 2. Installation
- 3. Functionality
- Global variables
- Categorization functions
- Enrichment analyses functions
- Extended DataFrame and data-processing functions
- Clustering functions
- Frequency Based Subject Match
- Visibility graph preparation functions
- Visibility Graph Community Detection
- Visualization functions
- Utility functions
- Data Storage
- 4. Dependencies
- 5. Included data
- 6. Examples